pyhf
v0.5.1
Introduction
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Fundamentals
Examples
Outreach
Installation
Developing
FAQ
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Python API
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Roadmap (2019-2020)
pyhf
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Z
Symbols
--algorithm <algorithm>
pyhf-digest command line option
--backend <backend>
pyhf-cls command line option
--basedir <basedir>
pyhf-xml2json command line option
--channel <CHANNEL>...>
pyhf-prune command line option
--channel <PATTERN> <REPLACE>...>
pyhf-rename command line option
--dataroot <dataroot>
pyhf-json2xml command line option
--hide-progress
pyhf-xml2json command line option
--join <join>
pyhf-combine command line option
--json
pyhf-digest command line option
--measurement <measurement>
pyhf-cls command line option
pyhf-inspect command line option
--measurement <MEASUREMENT>...>
pyhf-prune command line option
--measurement <PATTERN> <REPLACE>...>
pyhf-rename command line option
--modifier <MODIFIER>...>
pyhf-prune command line option
--modifier <PATTERN> <REPLACE>...>
pyhf-rename command line option
--modifier-type <modifier_type>
pyhf-prune command line option
--name <name>
pyhf-patchset-apply command line option
pyhf-patchset-extract command line option
--optconf <optconf>
pyhf-cls command line option
--optimizer <optimizer>
pyhf-cls command line option
--output-dir <output_dir>
pyhf-json2xml command line option
--output-file <output_file>
pyhf-cls command line option
pyhf-combine command line option
pyhf-inspect command line option
pyhf-patchset-apply command line option
pyhf-patchset-extract command line option
pyhf-prune command line option
pyhf-rename command line option
pyhf-xml2json command line option
--patch <patch>
pyhf-cls command line option
pyhf-json2xml command line option
--plaintext
pyhf-digest command line option
--resultprefix <resultprefix>
pyhf-json2xml command line option
--sample <PATTERN> <REPLACE>...>
pyhf-rename command line option
--sample <SAMPLE>...>
pyhf-prune command line option
--specroot <specroot>
pyhf-json2xml command line option
--testpoi <testpoi>
pyhf-cls command line option
--teststat <teststat>
pyhf-cls command line option
--track-progress
pyhf-xml2json command line option
--version
pyhf command line option
--with-metadata
pyhf-patchset-extract command line option
--without-metadata
pyhf-patchset-extract command line option
-a
pyhf-digest command line option
-c
pyhf-prune command line option
pyhf-rename command line option
-j
pyhf-combine command line option
pyhf-digest command line option
-m
pyhf-prune command line option
pyhf-rename command line option
-p
pyhf-cls command line option
pyhf-digest command line option
pyhf-json2xml command line option
-s
pyhf-prune command line option
pyhf-rename command line option
-t
pyhf-prune command line option
_
__init__() (pyhf.infer.calculators.AsymptoticCalculator method)
(pyhf.infer.calculators.AsymptoticTestStatDistribution method)
(pyhf.interpolators.code0 method)
(pyhf.interpolators.code1 method)
(pyhf.interpolators.code2 method)
(pyhf.interpolators.code4 method)
(pyhf.interpolators.code4p method)
(pyhf.optimize.mixins.OptimizerMixin method)
(pyhf.optimize.opt_minuit.minuit_optimizer method)
(pyhf.optimize.opt_scipy.scipy_optimizer method)
(pyhf.patchset.Patch method)
(pyhf.patchset.PatchSet method)
(pyhf.pdf._ModelConfig method)
(pyhf.pdf.Model method)
(pyhf.probability.Independent method)
(pyhf.probability.Normal method)
(pyhf.probability.Poisson method)
(pyhf.probability.Simultaneous method)
(pyhf.tensor.jax_backend.jax_backend method)
(pyhf.tensor.numpy_backend.numpy_backend method)
(pyhf.tensor.pytorch_backend.pytorch_backend method)
(pyhf.tensor.tensorflow_backend.tensorflow_backend method)
(pyhf.workspace.Workspace method)
_ModelConfig (class in pyhf.pdf)
A
abs() (pyhf.tensor.jax_backend.jax_backend method)
(pyhf.tensor.numpy_backend.numpy_backend method)
(pyhf.tensor.pytorch_backend.pytorch_backend method)
(pyhf.tensor.tensorflow_backend.tensorflow_backend method)
apply() (pyhf.patchset.PatchSet method)
astensor() (pyhf.tensor.jax_backend.jax_backend method)
(pyhf.tensor.numpy_backend.numpy_backend method)
(pyhf.tensor.pytorch_backend.pytorch_backend method)
(pyhf.tensor.tensorflow_backend.tensorflow_backend method)
AsymptoticCalculator (class in pyhf.infer.calculators)
AsymptoticTestStatDistribution (class in pyhf.infer.calculators)
B
BACKGROUND_ONLY
pyhf-patchset-apply command line option
pyhf-patchset-verify command line option
boolean_mask() (pyhf.tensor.jax_backend.jax_backend method)
(pyhf.tensor.numpy_backend.numpy_backend method)
(pyhf.tensor.pytorch_backend.pytorch_backend method)
(pyhf.tensor.tensorflow_backend.tensorflow_backend method)
C
clip() (pyhf.tensor.jax_backend.jax_backend method)
(pyhf.tensor.numpy_backend.numpy_backend method)
(pyhf.tensor.pytorch_backend.pytorch_backend method)
(pyhf.tensor.tensorflow_backend.tensorflow_backend method)
code0 (class in pyhf.interpolators)
code1 (class in pyhf.interpolators)
code2 (class in pyhf.interpolators)
code4 (class in pyhf.interpolators)
code4p (class in pyhf.interpolators)
combine() (pyhf.workspace.Workspace class method)
concatenate() (pyhf.tensor.jax_backend.jax_backend method)
(pyhf.tensor.numpy_backend.numpy_backend method)
(pyhf.tensor.pytorch_backend.pytorch_backend method)
(pyhf.tensor.tensorflow_backend.tensorflow_backend method)
conditional() (pyhf.tensor.jax_backend.jax_backend method)
(pyhf.tensor.numpy_backend.numpy_backend method)
(pyhf.tensor.pytorch_backend.pytorch_backend method)
(pyhf.tensor.tensorflow_backend.tensorflow_backend method)
constraint_logpdf() (pyhf.pdf.Model method)
D
data() (pyhf.workspace.Workspace method)
default_backend (in module pyhf)
default_do_grad (pyhf.tensor.jax_backend.jax_backend attribute)
(pyhf.tensor.numpy_backend.numpy_backend attribute)
(pyhf.tensor.pytorch_backend.pytorch_backend attribute)
(pyhf.tensor.tensorflow_backend.tensorflow_backend attribute)
default_optimizer (in module pyhf)
description (pyhf.patchset.PatchSet attribute)
digest() (in module pyhf.utils)
digests (pyhf.patchset.PatchSet attribute)
divide() (pyhf.tensor.jax_backend.jax_backend method)
(pyhf.tensor.numpy_backend.numpy_backend method)
(pyhf.tensor.pytorch_backend.pytorch_backend method)
(pyhf.tensor.tensorflow_backend.tensorflow_backend method)
dtypemap (pyhf.tensor.jax_backend.jax_backend attribute)
(pyhf.tensor.numpy_backend.numpy_backend attribute)
(pyhf.tensor.pytorch_backend.pytorch_backend attribute)
(pyhf.tensor.tensorflow_backend.tensorflow_backend attribute)
E
einsum() (pyhf.tensor.jax_backend.jax_backend method)
(pyhf.tensor.numpy_backend.numpy_backend method)
(pyhf.tensor.pytorch_backend.pytorch_backend method)
(pyhf.tensor.tensorflow_backend.tensorflow_backend method)
ENTRYPOINT_XML
pyhf-xml2json command line option
errordef (pyhf.optimize.opt_minuit.minuit_optimizer attribute)
exp() (pyhf.tensor.jax_backend.jax_backend method)
(pyhf.tensor.numpy_backend.numpy_backend method)
(pyhf.tensor.pytorch_backend.pytorch_backend method)
(pyhf.tensor.tensorflow_backend.tensorflow_backend method)
expected_actualdata() (pyhf.pdf.Model method)
expected_auxdata() (pyhf.pdf.Model method)
expected_data() (pyhf.pdf.Model method)
(pyhf.probability.Normal method)
(pyhf.probability.Poisson method)
(pyhf.probability.Simultaneous method)
F
fit() (in module pyhf.infer.mle)
fixed_poi_fit() (in module pyhf.infer.mle)
G
gather() (pyhf.tensor.jax_backend.jax_backend method)
(pyhf.tensor.numpy_backend.numpy_backend method)
(pyhf.tensor.pytorch_backend.pytorch_backend method)
(pyhf.tensor.tensorflow_backend.tensorflow_backend method)
generate_asimov_data() (in module pyhf.infer.calculators)
get_backend() (in module pyhf)
get_measurement() (pyhf.workspace.Workspace method)
H
hepdata_like (class in pyhf.simplemodels)
histosys (class in pyhf.modifiers)
hypotest() (in module pyhf.infer)
I
ImportBackendError (class in pyhf.exceptions)
Independent (class in pyhf.probability)
InvalidBackend (class in pyhf.exceptions)
InvalidInterpCode (class in pyhf.exceptions)
InvalidMeasurement (class in pyhf.exceptions)
InvalidModel (class in pyhf.exceptions)
InvalidModifier (class in pyhf.exceptions)
InvalidNameReuse (class in pyhf.exceptions)
InvalidOptimizer (class in pyhf.exceptions)
InvalidPatchLookup (class in pyhf.exceptions)
InvalidPatchSet (class in pyhf.exceptions)
InvalidPdfData (class in pyhf.exceptions)
InvalidPdfParameters (class in pyhf.exceptions)
InvalidSpecification (class in pyhf.exceptions)
InvalidWorkspaceOperation (class in pyhf.exceptions)
is_constrained (pyhf.modifiers.histosys attribute)
(pyhf.modifiers.normfactor attribute)
(pyhf.modifiers.normsys attribute)
(pyhf.modifiers.shapefactor attribute)
(pyhf.modifiers.shapesys attribute)
(pyhf.modifiers.staterror attribute)
isfinite() (pyhf.tensor.jax_backend.jax_backend method)
(pyhf.tensor.numpy_backend.numpy_backend method)
(pyhf.tensor.pytorch_backend.pytorch_backend method)
(pyhf.tensor.tensorflow_backend.tensorflow_backend method)
J
jax_backend (class in pyhf.tensor.jax_backend)
L
labels (pyhf.patchset.PatchSet attribute)
load_schema() (in module pyhf.utils)
log() (pyhf.tensor.jax_backend.jax_backend method)
(pyhf.tensor.numpy_backend.numpy_backend method)
(pyhf.tensor.pytorch_backend.pytorch_backend method)
(pyhf.tensor.tensorflow_backend.tensorflow_backend method)
log_prob() (pyhf.probability.Independent method)
(pyhf.probability.Simultaneous method)
logpdf() (pyhf.pdf.Model method)
M
mainlogpdf() (pyhf.pdf.Model method)
make_pdf() (pyhf.pdf.Model method)
maxiter (pyhf.optimize.mixins.OptimizerMixin attribute)
(pyhf.optimize.opt_minuit.minuit_optimizer attribute)
(pyhf.optimize.opt_scipy.scipy_optimizer attribute)
metadata (pyhf.patchset.Patch attribute)
(pyhf.patchset.PatchSet attribute)
minimize() (pyhf.optimize.mixins.OptimizerMixin method)
minuit_optimizer (class in pyhf.optimize.opt_minuit)
Model (class in pyhf.pdf)
model() (pyhf.workspace.Workspace method)
N
name (pyhf.optimize.opt_minuit.minuit_optimizer attribute)
(pyhf.optimize.opt_scipy.scipy_optimizer attribute)
(pyhf.patchset.Patch attribute)
(pyhf.tensor.jax_backend.jax_backend attribute)
(pyhf.tensor.numpy_backend.numpy_backend attribute)
(pyhf.tensor.pytorch_backend.pytorch_backend attribute)
(pyhf.tensor.tensorflow_backend.tensorflow_backend attribute)
nominal_rates (pyhf.pdf.Model attribute)
Normal (class in pyhf.probability)
normal() (pyhf.tensor.jax_backend.jax_backend method)
(pyhf.tensor.numpy_backend.numpy_backend method)
(pyhf.tensor.pytorch_backend.pytorch_backend method)
(pyhf.tensor.tensorflow_backend.tensorflow_backend method)
normal_cdf() (pyhf.tensor.jax_backend.jax_backend method)
(pyhf.tensor.numpy_backend.numpy_backend method)
(pyhf.tensor.pytorch_backend.pytorch_backend method)
(pyhf.tensor.tensorflow_backend.tensorflow_backend method)
normal_dist() (pyhf.tensor.jax_backend.jax_backend method)
(pyhf.tensor.numpy_backend.numpy_backend method)
(pyhf.tensor.pytorch_backend.pytorch_backend method)
(pyhf.tensor.tensorflow_backend.tensorflow_backend method)
normal_logpdf() (pyhf.tensor.jax_backend.jax_backend method)
(pyhf.tensor.numpy_backend.numpy_backend method)
(pyhf.tensor.pytorch_backend.pytorch_backend method)
(pyhf.tensor.tensorflow_backend.tensorflow_backend method)
normfactor (class in pyhf.modifiers)
normsys (class in pyhf.modifiers)
numpy_backend (class in pyhf.tensor.numpy_backend)
O
ones() (pyhf.tensor.jax_backend.jax_backend method)
(pyhf.tensor.numpy_backend.numpy_backend method)
(pyhf.tensor.pytorch_backend.pytorch_backend method)
(pyhf.tensor.tensorflow_backend.tensorflow_backend method)
op_code (pyhf.modifiers.histosys attribute)
(pyhf.modifiers.normfactor attribute)
(pyhf.modifiers.normsys attribute)
(pyhf.modifiers.shapefactor attribute)
(pyhf.modifiers.shapesys attribute)
(pyhf.modifiers.staterror attribute)
optimizer (in module pyhf)
OptimizerMixin (class in pyhf.optimize.mixins)
options_from_eqdelimstring() (in module pyhf.utils)
outer() (pyhf.tensor.jax_backend.jax_backend method)
(pyhf.tensor.numpy_backend.numpy_backend method)
(pyhf.tensor.pytorch_backend.pytorch_backend method)
(pyhf.tensor.tensorflow_backend.tensorflow_backend method)
P
par_slice() (pyhf.pdf._ModelConfig method)
param_set() (pyhf.pdf._ModelConfig method)
Patch (class in pyhf.patchset)
patches (pyhf.patchset.PatchSet attribute)
PATCHSET
pyhf-patchset-apply command line option
pyhf-patchset-extract command line option
pyhf-patchset-verify command line option
PatchSet (class in pyhf.patchset)
PatchSetVerificationError (class in pyhf.exceptions)
pdf() (pyhf.pdf.Model method)
pdf_type (pyhf.modifiers.histosys attribute)
(pyhf.modifiers.normfactor attribute)
(pyhf.modifiers.normsys attribute)
(pyhf.modifiers.shapefactor attribute)
(pyhf.modifiers.shapesys attribute)
(pyhf.modifiers.staterror attribute)
Poisson (class in pyhf.probability)
poisson() (pyhf.tensor.jax_backend.jax_backend method)
(pyhf.tensor.numpy_backend.numpy_backend method)
(pyhf.tensor.pytorch_backend.pytorch_backend method)
(pyhf.tensor.tensorflow_backend.tensorflow_backend method)
poisson_dist() (pyhf.tensor.jax_backend.jax_backend method)
(pyhf.tensor.numpy_backend.numpy_backend method)
(pyhf.tensor.pytorch_backend.pytorch_backend method)
(pyhf.tensor.tensorflow_backend.tensorflow_backend method)
poisson_logpdf() (pyhf.tensor.jax_backend.jax_backend method)
(pyhf.tensor.numpy_backend.numpy_backend method)
(pyhf.tensor.pytorch_backend.pytorch_backend method)
(pyhf.tensor.tensorflow_backend.tensorflow_backend method)
power() (pyhf.tensor.jax_backend.jax_backend method)
(pyhf.tensor.numpy_backend.numpy_backend method)
(pyhf.tensor.pytorch_backend.pytorch_backend method)
(pyhf.tensor.tensorflow_backend.tensorflow_backend method)
precision (pyhf.tensor.jax_backend.jax_backend attribute)
(pyhf.tensor.numpy_backend.numpy_backend attribute)
(pyhf.tensor.pytorch_backend.pytorch_backend attribute)
(pyhf.tensor.tensorflow_backend.tensorflow_backend attribute)
product() (pyhf.tensor.jax_backend.jax_backend method)
(pyhf.tensor.numpy_backend.numpy_backend method)
(pyhf.tensor.pytorch_backend.pytorch_backend method)
(pyhf.tensor.tensorflow_backend.tensorflow_backend method)
prune() (pyhf.workspace.Workspace method)
pyhf command line option
--version
pyhf-cls command line option
--backend <backend>
--measurement <measurement>
--optconf <optconf>
--optimizer <optimizer>
--output-file <output_file>
--patch <patch>
--testpoi <testpoi>
--teststat <teststat>
-p
WORKSPACE
pyhf-combine command line option
--join <join>
--output-file <output_file>
-j
WORKSPACE_ONE
WORKSPACE_TWO
pyhf-completions command line option
SHELL
pyhf-digest command line option
--algorithm <algorithm>
--json
--plaintext
-a
-j
-p
WORKSPACE
pyhf-inspect command line option
--measurement <measurement>
--output-file <output_file>
WORKSPACE
pyhf-json2xml command line option
--dataroot <dataroot>
--output-dir <output_dir>
--patch <patch>
--resultprefix <resultprefix>
--specroot <specroot>
-p
WORKSPACE
pyhf-patchset-apply command line option
--name <name>
--output-file <output_file>
BACKGROUND_ONLY
PATCHSET
pyhf-patchset-extract command line option
--name <name>
--output-file <output_file>
--with-metadata
--without-metadata
PATCHSET
pyhf-patchset-verify command line option
BACKGROUND_ONLY
PATCHSET
pyhf-prune command line option
--channel <CHANNEL>...>
--measurement <MEASUREMENT>...>
--modifier <MODIFIER>...>
--modifier-type <modifier_type>
--output-file <output_file>
--sample <SAMPLE>...>
-c
-m
-s
-t
WORKSPACE
pyhf-rename command line option
--channel <PATTERN> <REPLACE>...>
--measurement <PATTERN> <REPLACE>...>
--modifier <PATTERN> <REPLACE>...>
--output-file <output_file>
--sample <PATTERN> <REPLACE>...>
-c
-m
-s
WORKSPACE
pyhf-xml2json command line option
--basedir <basedir>
--hide-progress
--output-file <output_file>
--track-progress
ENTRYPOINT_XML
pytorch_backend (class in pyhf.tensor.pytorch_backend)
Q
qmu() (in module pyhf.infer.test_statistics)
qmu_tilde() (in module pyhf.infer.test_statistics)
R
references (pyhf.patchset.PatchSet attribute)
rename() (pyhf.workspace.Workspace method)
required_parset() (pyhf.modifiers.histosys class method)
(pyhf.modifiers.normfactor class method)
(pyhf.modifiers.normsys class method)
(pyhf.modifiers.shapefactor class method)
(pyhf.modifiers.shapesys class method)
(pyhf.modifiers.staterror class method)
reshape() (pyhf.tensor.jax_backend.jax_backend method)
(pyhf.tensor.numpy_backend.numpy_backend method)
(pyhf.tensor.pytorch_backend.pytorch_backend method)
(pyhf.tensor.tensorflow_backend.tensorflow_backend method)
S
sample() (pyhf.probability.Simultaneous method)
scipy_optimizer (class in pyhf.optimize.opt_scipy)
set_backend() (in module pyhf)
set_poi() (pyhf.pdf._ModelConfig method)
shape() (pyhf.tensor.jax_backend.jax_backend method)
(pyhf.tensor.numpy_backend.numpy_backend method)
(pyhf.tensor.pytorch_backend.pytorch_backend method)
(pyhf.tensor.tensorflow_backend.tensorflow_backend method)
shapefactor (class in pyhf.modifiers)
shapesys (class in pyhf.modifiers)
SHELL
pyhf-completions command line option
simple_broadcast() (pyhf.tensor.jax_backend.jax_backend method)
(pyhf.tensor.numpy_backend.numpy_backend method)
(pyhf.tensor.pytorch_backend.pytorch_backend method)
(pyhf.tensor.tensorflow_backend.tensorflow_backend method)
Simultaneous (class in pyhf.probability)
sqrt() (pyhf.tensor.jax_backend.jax_backend method)
(pyhf.tensor.numpy_backend.numpy_backend method)
(pyhf.tensor.pytorch_backend.pytorch_backend method)
(pyhf.tensor.tensorflow_backend.tensorflow_backend method)
stack() (pyhf.tensor.jax_backend.jax_backend method)
(pyhf.tensor.numpy_backend.numpy_backend method)
(pyhf.tensor.pytorch_backend.pytorch_backend method)
(pyhf.tensor.tensorflow_backend.tensorflow_backend method)
staterror (class in pyhf.modifiers)
steps (pyhf.optimize.opt_minuit.minuit_optimizer attribute)
suggested_bounds() (pyhf.pdf._ModelConfig method)
suggested_fixed() (pyhf.pdf._ModelConfig method)
suggested_init() (pyhf.pdf._ModelConfig method)
sum() (pyhf.tensor.jax_backend.jax_backend method)
(pyhf.tensor.numpy_backend.numpy_backend method)
(pyhf.tensor.pytorch_backend.pytorch_backend method)
(pyhf.tensor.tensorflow_backend.tensorflow_backend method)
T
tensorflow_backend (class in pyhf.tensor.tensorflow_backend)
tensorlib (in module pyhf)
tile() (pyhf.tensor.jax_backend.jax_backend method)
(pyhf.tensor.numpy_backend.numpy_backend method)
(pyhf.tensor.pytorch_backend.pytorch_backend method)
(pyhf.tensor.tensorflow_backend.tensorflow_backend method)
tmu() (in module pyhf.infer.test_statistics)
tmu_tilde() (in module pyhf.infer.test_statistics)
tolist() (pyhf.tensor.jax_backend.jax_backend method)
(pyhf.tensor.numpy_backend.numpy_backend method)
(pyhf.tensor.pytorch_backend.pytorch_backend method)
(pyhf.tensor.tensorflow_backend.tensorflow_backend method)
twice_nll() (in module pyhf.infer.mle)
V
valid_joins (pyhf.workspace.Workspace attribute)
validate() (in module pyhf.utils)
values (pyhf.patchset.Patch attribute)
verbose (pyhf.optimize.mixins.OptimizerMixin attribute)
(pyhf.optimize.opt_minuit.minuit_optimizer attribute)
(pyhf.optimize.opt_scipy.scipy_optimizer attribute)
verify() (pyhf.patchset.PatchSet method)
version (pyhf.patchset.PatchSet attribute)
W
where() (pyhf.tensor.jax_backend.jax_backend method)
(pyhf.tensor.numpy_backend.numpy_backend method)
(pyhf.tensor.pytorch_backend.pytorch_backend method)
(pyhf.tensor.tensorflow_backend.tensorflow_backend method)
WORKSPACE
pyhf-cls command line option
pyhf-digest command line option
pyhf-inspect command line option
pyhf-json2xml command line option
pyhf-prune command line option
pyhf-rename command line option
Workspace (class in pyhf.workspace)
WORKSPACE_ONE
pyhf-combine command line option
WORKSPACE_TWO
pyhf-combine command line option
Z
zeros() (pyhf.tensor.jax_backend.jax_backend method)
(pyhf.tensor.numpy_backend.numpy_backend method)
(pyhf.tensor.pytorch_backend.pytorch_backend method)
(pyhf.tensor.tensorflow_backend.tensorflow_backend method)
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v: v0.5.1
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