Source code for pyhf.modifiers.shapesys

import logging

from . import modifier
from .. import get_backend, default_backend, events
from ..parameters import constrained_by_poisson, ParamViewer

log = logging.getLogger(__name__)


[docs]@modifier( name='shapesys', constrained=True, pdf_type='poisson', op_code='multiplication' ) class shapesys(object):
[docs] @classmethod def required_parset(cls, n_parameters): return { 'paramset_type': constrained_by_poisson, 'n_parameters': n_parameters, 'modifier': cls.__name__, 'is_constrained': cls.is_constrained, 'is_shared': False, 'inits': (1.0,) * n_parameters, 'bounds': ((1e-10, 10.0),) * n_parameters, # nb: auxdata/factors set by finalize. Set to non-numeric to crash # if we fail to set auxdata/factors correctly 'auxdata': (None,) * n_parameters, 'factors': (None,) * n_parameters, }
class shapesys_combined(object): def __init__(self, shapesys_mods, pdfconfig, mega_mods, batch_size=None): self.batch_size = batch_size keys = ['{}/{}'.format(mtype, m) for m, mtype in shapesys_mods] self._shapesys_mods = [m for m, _ in shapesys_mods] parfield_shape = (self.batch_size or 1, pdfconfig.npars) self.param_viewer = ParamViewer( parfield_shape, pdfconfig.par_map, self._shapesys_mods ) self._shapesys_mask = [ [[mega_mods[m][s]['data']['mask']] for s in pdfconfig.samples] for m in keys ] self.__shapesys_uncrt = default_backend.astensor( [ [ [ mega_mods[m][s]['data']['uncrt'], mega_mods[m][s]['data']['nom_data'], ] for s in pdfconfig.samples ] for m in keys ] ) self.finalize(pdfconfig) global_concatenated_bin_indices = [ [[j for c in pdfconfig.channels for j in range(pdfconfig.channel_nbins[c])]] ] self._access_field = default_backend.tile( global_concatenated_bin_indices, (len(shapesys_mods), self.batch_size or 1, 1), ) # access field is shape (sys, batch, globalbin) for s, syst_access in enumerate(self._access_field): for t, batch_access in enumerate(syst_access): selection = self.param_viewer.index_selection[s][t] for b, bin_access in enumerate(batch_access): self._access_field[s, t, b] = ( selection[bin_access] if bin_access < len(selection) else 0 ) self._precompute() events.subscribe('tensorlib_changed')(self._precompute) def _precompute(self): tensorlib, _ = get_backend() if not self.param_viewer.index_selection: return self.shapesys_mask = tensorlib.astensor(self._shapesys_mask, dtype="bool") self.shapesys_mask = tensorlib.tile( self.shapesys_mask, (1, 1, self.batch_size or 1, 1) ) self.access_field = tensorlib.astensor(self._access_field, dtype='int') self.sample_ones = tensorlib.ones(tensorlib.shape(self.shapesys_mask)[1]) self.shapesys_default = tensorlib.ones(tensorlib.shape(self.shapesys_mask)) def finalize(self, pdfconfig): for uncert_this_mod, pname in zip(self.__shapesys_uncrt, self._shapesys_mods): unc_nom = default_backend.astensor( [x for x in uncert_this_mod[:, :, :] if any(x[0][x[0] > 0])] ) unc = unc_nom[0, 0] nom = unc_nom[0, 1] unc_sq = default_backend.power(unc, 2) nom_sq = default_backend.power(nom, 2) # the below tries to filter cases in which # this modifier is not used by checking non # zeroness.. shoudl probably use mask numerator = default_backend.where( unc_sq > 0, nom_sq, default_backend.zeros(unc_sq.shape) ) denominator = default_backend.where( unc_sq > 0, unc_sq, default_backend.ones(unc_sq.shape) ) factors = numerator / denominator factors = factors[factors > 0] assert len(factors) == pdfconfig.param_set(pname).n_parameters pdfconfig.param_set(pname).factors = default_backend.tolist(factors) pdfconfig.param_set(pname).auxdata = default_backend.tolist(factors) def apply(self, pars): ''' Returns: modification tensor: Shape (n_modifiers, n_global_samples, n_alphas, n_global_bin) ''' tensorlib, _ = get_backend() if not self.param_viewer.index_selection: return tensorlib, _ = get_backend() if self.batch_size is None: flat_pars = pars else: flat_pars = tensorlib.reshape(pars, (-1,)) shapefactors = tensorlib.gather(flat_pars, self.access_field) results_shapesys = tensorlib.einsum( 'mab,s->msab', shapefactors, self.sample_ones ) results_shapesys = tensorlib.where( self.shapesys_mask, results_shapesys, self.shapesys_default ) return results_shapesys