Source code for pyhf.modifiers.shapesys

import logging

from . import modifier
from ..paramsets import constrained_by_poisson
from .. import get_backend, default_backend, events

log = logging.getLogger(__name__)


[docs]@modifier( name='shapesys', constrained=True, pdf_type='poisson', op_code='multiplication' ) class shapesys(object):
[docs] @classmethod def required_parset(cls, n_parameters): return { 'paramset_type': constrained_by_poisson, 'n_parameters': n_parameters, 'modifier': cls.__name__, 'is_constrained': cls.is_constrained, 'is_shared': False, 'inits': (1.0,) * n_parameters, 'bounds': ((1e-10, 10.0),) * n_parameters, # nb: auxdata/factors set by finalize. Set to non-numeric to crash # if we fail to set auxdata/factors correctly 'auxdata': (None,) * n_parameters, 'factors': (None,) * n_parameters, }
class shapesys_combined(object): def __init__(self, shapesys_mods, pdfconfig, mega_mods): pnames = [pname for pname, _ in shapesys_mods] keys = ['{}/{}'.format(mtype, m) for m, mtype in shapesys_mods] shapesys_mods = [m for m, _ in shapesys_mods] self._shapesys_mods = shapesys_mods self._pnames = pnames self._parindices = list(range(len(pdfconfig.suggested_init()))) self._shapesys_indices = [ self._parindices[pdfconfig.par_slice(p)] for p in pnames ] self._shapesys_mask = [ [[mega_mods[s][m]['data']['mask']] for s in pdfconfig.samples] for m in keys ] self.__shapesys_uncrt = default_backend.astensor( [ [ [ mega_mods[s][m]['data']['uncrt'], mega_mods[s][m]['data']['nom_data'], ] for s in pdfconfig.samples ] for m in keys ] ) if self._shapesys_indices: access_rows = [] shapesys_mask = default_backend.astensor(self._shapesys_mask) for mask, inds in zip(shapesys_mask, self._shapesys_indices): summed_mask = default_backend.sum(mask[:, 0, :], axis=0) assert default_backend.shape( summed_mask[summed_mask > 0] ) == default_backend.shape(default_backend.astensor(inds)) # make masks of > 0 and == 0 positive_mask = summed_mask > 0 zero_mask = summed_mask == 0 # then apply the mask summed_mask[positive_mask] = inds summed_mask[zero_mask] = len(self._parindices) - 1 access_rows.append(summed_mask.tolist()) self._factor_access_indices = default_backend.tolist( default_backend.stack(access_rows) ) self.finalize(pdfconfig) else: self._factor_access_indices = None self._precompute() events.subscribe('tensorlib_changed')(self._precompute) def _precompute(self): tensorlib, _ = get_backend() self.shapesys_mask = tensorlib.astensor(self._shapesys_mask) self.shapesys_default = tensorlib.ones(tensorlib.shape(self.shapesys_mask)) if self._shapesys_indices: self.factor_access_indices = tensorlib.astensor( self._factor_access_indices, dtype='int' ) self.default_value = tensorlib.astensor([1.0]) self.sample_ones = tensorlib.ones(tensorlib.shape(self.shapesys_mask)[1]) self.alpha_ones = tensorlib.astensor([1]) else: self.factor_access_indices = None def finalize(self, pdfconfig): for uncert_this_mod, pname in zip(self.__shapesys_uncrt, self._pnames): unc_nom = default_backend.astensor( [x for x in uncert_this_mod[:, :, :] if any(x[0][x[0] > 0])] ) unc = unc_nom[0, 0] nom = unc_nom[0, 1] unc_sq = default_backend.power(unc, 2) nom_sq = default_backend.power(nom, 2) # the below tries to filter cases in which # this modifier is not used by checking non # zeroness.. shoudl probably use mask numerator = default_backend.where( unc_sq > 0, nom_sq, default_backend.zeros(unc_sq.shape) ) denominator = default_backend.where( unc_sq > 0, unc_sq, default_backend.ones(unc_sq.shape) ) factors = numerator / denominator factors = factors[factors > 0] assert len(factors) == pdfconfig.param_set(pname).n_parameters pdfconfig.param_set(pname).factors = default_backend.tolist(factors) pdfconfig.param_set(pname).auxdata = default_backend.tolist(factors) def apply(self, pars): tensorlib, _ = get_backend() if self.factor_access_indices is None: return tensorlib, _ = get_backend() factor_row = tensorlib.gather( tensorlib.concatenate([tensorlib.astensor(pars), self.default_value]), self.factor_access_indices, ) results_shapesys = tensorlib.einsum( 's,a,mb->msab', tensorlib.astensor(self.sample_ones), tensorlib.astensor(self.alpha_ones), factor_row, ) results_shapesys = tensorlib.where( self.shapesys_mask, results_shapesys, self.shapesys_default ) return results_shapesys